Failed to connect to MySQL: Access denied for user 'metdb_user'@'localhost' to database 'metdb0915' HPMCD: Human Pan Microbial Communities Database

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Live Data Statistics

Current Version: 1.16.0

Release Date: 25 May 2017

Total Samples: 5432

Identified Gene Ontologies:


Manually Curated Gastrointestinal Microbes:

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Help and Data

On this page you will find an overview of the data included in the site, a flat file download and links to tutorials to get you started on basic analysis.


Please cite the following paper if you make use of the Human Pan-Microbe Community Database

HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes.
Forster SC, Browne HP, Kumar N, Hunt M, Denise H, Mitchell A, Finn RD, Lawley TD.
Nucleic Acids Res. 2015 Nov 17. pii: gkv1216