Live Data Statistics
Current Version: 1.16.0
Release Date: 25 May 2017
Total Samples: 5432
Identified Gene Ontologies: 2398
Manually Curated Gastrointestinal Microbes: 250
Last 6 Months
All Time1: sam
Help and Data
On this page you will find an overview of the data included in the site, a flat file download and links to tutorials to get you started on basic analysis.
Please cite the following paper if you make use of the Human Pan-Microbe Community Database
HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes.
Forster SC, Browne HP, Kumar N, Hunt M, Denise H, Mitchell A, Finn RD, Lawley TD.
Nucleic Acids Res. 2015 Nov 17. pii: gkv1216
User Manual version 1.16 (pdf)
Quick Start Guides & Videos
Comparison Search: Search By Sample
Microbiota Search: Search By Community Structure
Functional Search: Search by Functional Enrichment
Sequence Search: Search by Sequence Occurence