name taxonomyid knowngastric culturedgastric Faecalibacterium prausnitzii 853 1 1 Ruminococcus bromii 40518 1 1 Ruminococcus champanellensis 1161942 1 1 Ruminococcus albus 1264 1 1 Subdoligranulum variabile 214851 1 1 [Eubacterium] siraeum 39492 1 1 [Clostridium] leptum 1535 1 1 Anaerotruncus colihominis 169435 1 1 Ethanoligenens harbinense 253239 1 1 Roseburia faecis 301302 1 1 Roseburia hominis 301301 1 1 Roseburia inulinivorans 360807 1 1 Roseburia intestinalis 166486 1 1 [Ruminococcus] obeum 40520 1 1 Blautia wexlerae 418240 1 1 [Ruminococcus] torques 33039 1 1 Blautia glucerasea 536633 1 1 [Ruminococcus] gnavus 33038 1 1 Fusicatenibacter saccharivorans 1150298 1 1 Lachnospira pectinoschiza 28052 1 1 Coprococcus catus 116085 1 0 Coprococcus comes 410072 1 1 Coprococcus eutactus 33043 1 1 [Clostridium] clostridioforme 1531 1 1 [Clostridium] symbiosum 1512 1 1 [Clostridium] bolteae 208479 1 1 [Clostridium] hathewayi 154046 1 1 [Eubacterium] contortum 39482 1 1 [Eubacterium] fissicatena 290055 1 1 Lachnoclostridium phytofermentans 66219 1 1 Anaerostipes hadrus 649756 1 1 Anaerostipes caccae 105841 1 1 Dorea longicatena 88431 1 1 [Clostridium] lactatifermentans 160404 1 1 Butyrivibrio fibrisolvens 831 1 0 [Eubacterium] eligens 39485 1 1 Eubacterium rectale 39491 1 1 [Eubacterium] hallii 39488 1 1 Eubacterium ramulus 39490 1 1 Eubacterium ventriosum 39496 1 1 Clostridium sp. SY8519 1042156 1 1 Clostridium botulinum 1491 1 1 Clostridium tetani 1513 1 1 Clostridium tertium 1559 1 1 [Clostridium] cellulolyticum 1521 1 1 Clostridium disporicum 84024 1 1 Clostridium beijerinckii 1520 1 1 Clostridium butyricum 1492 1 1 Clostridium paraputrificum 29363 1 1 Clostridium maritimum 479906 1 1 Clostridium perfringens 1502 1 1 Clostridium saccharobutylicum 169679 1 1 Clostridium baratii 1561 1 1 Clostridium autoethanogenum 84023 1 1 Butyricicoccus pullicaecorum 501571 1 1 Sarcina ventriculi 1267 1 1 Flavonifractor plautii 292800 1 1 Oscillibacter valericigenes 351091 1 1 Intestinibacter bartlettii 261299 1 1 Peptoclostridium difficile 1496 1 1 Terrisporobacter glycolicus 36841 1 1 Filifactor alocis 143361 1 1 Desulfitobacterium hafniense 49338 1 0 Candidatus Desulforudis audaxviator 471827 1 1 Finegoldia magna 1260 1 0 Lactobacillus acidophilus 1579 1 0 Lactobacillus helveticus 1587 1 1 Lactobacillus ruminis 1623 1 1 Lactobacillus casei 1582 1 0 Lactobacillus johnsonii 33959 1 0 Lactobacillus plantarum 1590 1 1 Lactobacillus fermentum 1613 1 0 Lactobacillus reuteri 1598 1 0 Lactobacillus gasseri 1596 1 1 Lactobacillus vaginalis 1633 1 1 Lactobacillus curvatus 28038 1 1 Lactobacillus brevis 1580 1 0 Lactobacillus buchneri 1581 1 0 Lactobacillus salivarius 1624 1 1 Lactobacillus rhamnosus 47715 1 1 Streptococcus salivarius 1304 1 1 Streptococcus parasanguinis 1318 1 1 Streptococcus sanguinis 1305 1 1 Streptococcus australis 113107 1 1 Streptococcus suis 1307 1 1 Streptococcus agalactiae 1311 1 1 Streptococcus mutans 1309 1 1 Enterococcus faecium 1352 1 1 Enterococcus faecalis 1351 1 1 Enterococcus casseliflavus 37734 1 1 Enterococcus gallinarum 1353 1 1 Leuconostoc mesenteroides 1245 1 1 Bacillus cereus 1396 1 1 Bacillus subtilis 1423 1 1 Bacillus licheniformis 1402 1 1 Staphylococcus aureus 1280 1 1 Listeria monocytogenes 1639 1 0 Listeria welshimeri 1643 1 0 [Clostridium] innocuum 1522 1 1 [Clostridium] saccharogumia 341225 1 1 Erysipelatoclostridium ramosum 1547 1 1 Catenibacterium mitsuokai 100886 1 1 Turicibacter sanguinis 154288 1 1 Veillonella parvula 29466 1 0 Mitsuokella jalaludinii 187979 1 1 Megasphaera elsdenii 907 1 1 Acidaminococcus fermentans 905 1 0 Acidaminococcus intestini 187327 1 0 Bacteroides fragilis 817 1 1 Bacteroides nordii 291645 1 1 Bacteroides caccae 47678 1 1 Bacteroides thetaiotaomicron 818 1 1 Bacteroides uniformis 820 1 1 Bacteroides vulgatus 821 1 1 Bacteroides xylanisolvens 371601 1 1 Bacteroides cellulosilyticus 246787 1 1 Bacteroides ovatus 28116 1 1 Bacteroides salyersiae 291644 1 1 Bacteroides faecis 674529 1 1 Bacteroides finegoldii 338188 1 1 Parabacteroides distasonis 823 1 1 Parabacteroides merdae 46503 1 1 Butyricimonas virosa 544645 1 1 Alistipes finegoldii 214856 1 1 Alistipes putredinis 28117 1 1 Alistipes shahii 328814 1 1 Alistipes onderdonkii 328813 1 1 Prevotella copri 165179 1 1 [Clostridium] bifermentans 1490 1 1 Listeria innocua 1642 1 0 Klebsiella oxytoca 571 1 1 Klebsiella pneumoniae 573 1 1 Klebsiella variicola 244366 1 0 Enterobacter cloacae 550 1 1 Enterobacter ludwigii 299767 1 1 Enterobacter aerogenes 548 1 0 Escherichia coli 562 1 1 Raoultella ornithinolytica 54291 1 0 Edwardsiella tarda 636 1 0 Dickeya dadantii 204038 1 1 Dickeya zeae 204042 1 1 Proteus mirabilis 584 1 0 Kluyvera cryocrescens 580 1 1 Morganella morganii 582 1 0 Moraxella catarrhalis 480 1 1 Vibrio cholerae 666 1 0 Burkholderia pseudomallei 28450 1 0 Burkholderia cenocepacia 95486 1 0 Cupriavidus metallidurans 119219 1 1 Cupriavidus necator 106590 1 1 Achromobacter xylosoxidans 85698 1 1 Neisseria meningitidis 487 1 1 Sinorhizobium fredii 380 1 1 Gluconobacter oxydans 442 1 1 Campylobacter concisus 199 1 0 Campylobacter jejuni 197 1 0 Campylobacter coli 195 1 0 Arcobacter butzleri 28197 1 1 Helicobacter pylori 210 1 0 Clostridium ljungdahlii 1538 1 1 Providencia stuartii 588 1 0 Helicobacter cinaedi 213 1 0 Burkholderia mallei 13373 1 0 Burkholderia cepacia 292 1 0 Burkholderia lata 482957 1 0 Burkholderia gladioli 28095 1 0 Lactobacillus paracasei 1597 1 0 Blautia hydrogenotrophica 53443 1 1 Fusobacterium nucleatum 851 1 0 Collinsella aerofaciens 74426 1 0 Eggerthella lenta 84112 1 0 Adlercreutzia equolifaciens 446660 1 0 Gordonibacter pamelaeae 471189 1 0 Bifidobacterium adolescentis 1680 1 1 Bifidobacterium bifidum 1681 1 1 Bifidobacterium pseudocatenulatum 28026 1 0 Bifidobacterium animalis 28025 1 0 Bifidobacterium dentium 1689 1 0 Bifidobacterium breve 1685 1 1 Micrococcus luteus 1270 1 0 Methanobrevibacter smithii 2173 1 0 Mycoplasma hominis 2098 1 0